J5_3CCJ_005

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CCJ|1|0|G|1814, 3CCJ|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CCJ_005 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0628

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3CCJ|1|0|G|1752
3CCJ|1|0|C|1753
3CCJ|1|0|A|1754
3CCJ|1|0|A|1755
3CCJ|1|0|G|1756
3CCJ|1|0|U|1757
3CCJ|1|0|U|1758
3CCJ|1|0|A|1759
3CCJ|1|0|G|1760
*
3CCJ|1|0|U|1784
3CCJ|1|0|G|1785
*
3CCJ|1|0|U|1807
3CCJ|1|0|C|1808
*
3CCJ|1|0|G|1812
3CCJ|1|0|U|1813
3CCJ|1|0|G|1814
3CCJ|1|0|A|1815
3CCJ|1|0|C|1816
3CCJ|1|0|U|1817
3CCJ|1|0|C|1818
3CCJ|1|0|G|1819
3CCJ|1|0|G|1820
*
3CCJ|1|0|C|2029
3CCJ|1|0|A|2030
3CCJ|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e