J5_3CCL_006

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CCL|1|0|G|1814, 3CCL|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CCL_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0363

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3CCL|1|0|G|1752
3CCL|1|0|C|1753
3CCL|1|0|A|1754
3CCL|1|0|A|1755
3CCL|1|0|G|1756
3CCL|1|0|U|1757
3CCL|1|0|U|1758
3CCL|1|0|A|1759
3CCL|1|0|G|1760
*
3CCL|1|0|U|1784
3CCL|1|0|G|1785
*
3CCL|1|0|U|1807
3CCL|1|0|C|1808
*
3CCL|1|0|G|1812
3CCL|1|0|U|1813
3CCL|1|0|G|1814
3CCL|1|0|A|1815
3CCL|1|0|C|1816
3CCL|1|0|U|1817
3CCL|1|0|C|1818
3CCL|1|0|G|1819
3CCL|1|0|G|1820
*
3CCL|1|0|C|2029
3CCL|1|0|A|2030
3CCL|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e