J5_3CCQ_006

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CCQ|1|0|G|1814, 3CCQ|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CCQ_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0366

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3CCQ|1|0|G|1752
3CCQ|1|0|C|1753
3CCQ|1|0|A|1754
3CCQ|1|0|A|1755
3CCQ|1|0|G|1756
3CCQ|1|0|U|1757
3CCQ|1|0|U|1758
3CCQ|1|0|A|1759
3CCQ|1|0|G|1760
*
3CCQ|1|0|U|1784
3CCQ|1|0|G|1785
*
3CCQ|1|0|U|1807
3CCQ|1|0|C|1808
*
3CCQ|1|0|G|1812
3CCQ|1|0|U|1813
3CCQ|1|0|G|1814
3CCQ|1|0|A|1815
3CCQ|1|0|C|1816
3CCQ|1|0|U|1817
3CCQ|1|0|C|1818
3CCQ|1|0|G|1819
3CCQ|1|0|G|1820
*
3CCQ|1|0|C|2029
3CCQ|1|0|A|2030
3CCQ|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e