3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CAGAAAA
Length
19 nucleotides
Bulged bases
3CCQ|1|0|U|2117, 3CCQ|1|0|A|2465, 3CCQ|1|0|G|2466, 3CCQ|1|0|A|2467, 3CCQ|1|0|A|2468
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_3CCQ_008 not in the Motif Atlas
Homologous match to J5_4V9F_008
Geometric discrepancy: 0.0287
The information below is about J5_4V9F_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_08912.1
Basepair signature
cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

3CCQ|1|0|U|2115
3CCQ|1|0|U|2116
3CCQ|1|0|U|2117
3CCQ|1|0|A|2118
*
3CCQ|1|0|U|2276
3CCQ|1|0|U|2277
3CCQ|1|0|U|2278
3CCQ|1|0|G|2279
*
3CCQ|1|0|C|2292
3CCQ|1|0|G|2293
*
3CCQ|1|0|C|2315
3CCQ|1|0|G|2316
*
3CCQ|1|0|C|2464
3CCQ|1|0|A|2465
3CCQ|1|0|G|2466
3CCQ|1|0|A|2467
3CCQ|1|0|A|2468
3CCQ|1|0|A|2469
3CCQ|1|0|A|2470

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain 3
50S ribosomal protein L44E
Chain A
50S ribosomal protein L2P
Chain L
50S ribosomal protein L15P
Chain M
50S ribosomal protein L15e
Chain Q
50S ribosomal protein L21e

Coloring options:


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