J5_3CCR_006

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CCR|1|0|G|1814, 3CCR|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CCR_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.045

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3CCR|1|0|G|1752
3CCR|1|0|C|1753
3CCR|1|0|A|1754
3CCR|1|0|A|1755
3CCR|1|0|G|1756
3CCR|1|0|U|1757
3CCR|1|0|U|1758
3CCR|1|0|A|1759
3CCR|1|0|G|1760
*
3CCR|1|0|U|1784
3CCR|1|0|G|1785
*
3CCR|1|0|U|1807
3CCR|1|0|C|1808
*
3CCR|1|0|G|1812
3CCR|1|0|U|1813
3CCR|1|0|G|1814
3CCR|1|0|A|1815
3CCR|1|0|C|1816
3CCR|1|0|U|1817
3CCR|1|0|C|1818
3CCR|1|0|G|1819
3CCR|1|0|G|1820
*
3CCR|1|0|C|2029
3CCR|1|0|A|2030
3CCR|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e