J5_3CF5_001

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

3CF5|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CF5_001 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.113

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3CF5|1|X|C|46
3CF5|1|X|G|47
3CF5|1|X|A|48
3CF5|1|X|U|49
3CF5|1|X|G|50
3CF5|1|X|A|51
3CF5|1|X|A|52
3CF5|1|X|G|53
*
3CF5|1|X|C|114
3CF5|1|X|G|115
3CF5|1|X|A|116
3CF5|1|X|A|117
3CF5|1|X|U|118
3CF5|1|X|G|119
*
3CF5|1|X|C|128
3CF5|1|X|A|129
*
3CF5|1|X|U|142
3CF5|1|X|A|143
*
3CF5|1|X|U|154
3CF5|1|X|G|155

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain Q

50S RIBOSOMAL PROTEIN L23