J5_3CXC_006

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3CXC|1|0|G|1814, 3CXC|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3CXC_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0397

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3CXC|1|0|G|1752
3CXC|1|0|C|1753
3CXC|1|0|A|1754
3CXC|1|0|A|1755
3CXC|1|0|G|1756
3CXC|1|0|U|1757
3CXC|1|0|U|1758
3CXC|1|0|A|1759
3CXC|1|0|G|1760
*
3CXC|1|0|U|1784
3CXC|1|0|G|1785
*
3CXC|1|0|U|1807
3CXC|1|0|C|1808
*
3CXC|1|0|G|1812
3CXC|1|0|U|1813
3CXC|1|0|G|1814
3CXC|1|0|A|1815
3CXC|1|0|C|1816
3CXC|1|0|U|1817
3CXC|1|0|C|1818
3CXC|1|0|G|1819
3CXC|1|0|G|1820
*
3CXC|1|0|C|2029
3CXC|1|0|A|2030
3CXC|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14

Chain O

RIBOSOMAL PROTEIN L19E