J5_3G6E_006

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3G6E|1|0|G|1814, 3G6E|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3G6E_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0309

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3G6E|1|0|G|1752
3G6E|1|0|C|1753
3G6E|1|0|A|1754
3G6E|1|0|A|1755
3G6E|1|0|G|1756
3G6E|1|0|U|1757
3G6E|1|0|U|1758
3G6E|1|0|A|1759
3G6E|1|0|G|1760
*
3G6E|1|0|U|1784
3G6E|1|0|G|1785
*
3G6E|1|0|U|1807
3G6E|1|0|C|1808
*
3G6E|1|0|G|1812
3G6E|1|0|U|1813
3G6E|1|0|G|1814
3G6E|1|0|A|1815
3G6E|1|0|C|1816
3G6E|1|0|U|1817
3G6E|1|0|C|1818
3G6E|1|0|G|1819
3G6E|1|0|G|1820
*
3G6E|1|0|C|2029
3G6E|1|0|A|2030
3G6E|1|0|C|2031

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e