J5_3I55_006

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3I55|1|0|G|1814, 3I55|1|0|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3I55_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.0456

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3I55|1|0|G|1752
3I55|1|0|C|1753
3I55|1|0|A|1754
3I55|1|0|A|1755
3I55|1|0|G|1756
3I55|1|0|U|1757
3I55|1|0|U|1758
3I55|1|0|A|1759
3I55|1|0|G|1760
*
3I55|1|0|U|1784
3I55|1|0|G|1785
*
3I55|1|0|U|1807
3I55|1|0|C|1808
*
3I55|1|0|G|1812
3I55|1|0|U|1813
3I55|1|0|G|1814
3I55|1|0|A|1815
3I55|1|0|C|1816
3I55|1|0|U|1817
3I55|1|0|C|1818
3I55|1|0|G|1819
3I55|1|0|G|1820
*
3I55|1|0|C|2029
3I55|1|0|A|2030
3I55|1|0|C|2031

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P

Chain P

50S ribosomal protein L19e