J5_3IGI_001

3D structure

PDB id

3IGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

3IGI|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_71312.1

Basepair signature

cWW-cSS-F-F-tWH-tHS-tHS-cWW-cWW-tWW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3IGI|1|A|U|24
3IGI|1|A|A|25
3IGI|1|A|U|26
3IGI|1|A|A|27
3IGI|1|A|G|28
*
3IGI|1|A|C|40
3IGI|1|A|G|41
3IGI|1|A|A|42
3IGI|1|A|A|43
*
3IGI|1|A|U|65
3IGI|1|A|U|66
3IGI|1|A|A|67
3IGI|1|A|G|68
*
3IGI|1|A|C|119
3IGI|1|A|A|120
3IGI|1|A|A|121
3IGI|1|A|A|122
3IGI|1|A|C|123
*
3IGI|1|A|G|243
3IGI|1|A|G|244
3IGI|1|A|A|245
3IGI|1|A|A|246
3IGI|1|A|A|247

Current chains

Chain A

Group IIC intron

Nearby chains