J5_3J28_001

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J28_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.3254

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3J28|1|N|C|36
3J28|1|N|U|37
3J28|1|N|G|38
3J28|1|N|G|39
*
3J28|1|N|C|403
3J28|1|N|G|404
3J28|1|N|U|405
3J28|1|N|G|406
*
3J28|1|N|C|436
3J28|1|N|U|437
3J28|1|N|U|438
3J28|1|N|U|439
3J28|1|N|C|440
*
3J28|1|N|G|497
3J28|1|N|A|498
3J28|1|N|A|499
3J28|1|N|G|500
*
3J28|1|N|C|545
3J28|1|N|A|546
3J28|1|N|A|547
3J28|1|N|G|548

Current chains

Chain N

16S rRNA

Nearby chains