J5_3J29_002

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J29_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.3004

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3J29|1|N|C|36
3J29|1|N|U|37
3J29|1|N|G|38
3J29|1|N|G|39
*
3J29|1|N|C|403
3J29|1|N|G|404
3J29|1|N|U|405
3J29|1|N|G|406
*
3J29|1|N|C|436
3J29|1|N|U|437
3J29|1|N|U|438
3J29|1|N|U|439
3J29|1|N|C|440
3J29|1|N|A|441
3J29|1|N|G|442
*
3J29|1|N|C|492
3J29|1|N|A|493
3J29|1|N|G|494
3J29|1|N|A|495
3J29|1|N|A|496
3J29|1|N|G|497
3J29|1|N|A|498
3J29|1|N|A|499
3J29|1|N|G|500
*
3J29|1|N|C|545
3J29|1|N|A|546
3J29|1|N|A|547
3J29|1|N|G|548

Current chains

Chain N

16S rRNA

Nearby chains