3D structure

PDB id
3J29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_3J29_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.3004
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

3J29|1|N|C|36
3J29|1|N|U|37
3J29|1|N|G|38
3J29|1|N|G|39
*
3J29|1|N|C|403
3J29|1|N|G|404
3J29|1|N|U|405
3J29|1|N|G|406
*
3J29|1|N|C|436
3J29|1|N|U|437
3J29|1|N|U|438
3J29|1|N|U|439
3J29|1|N|C|440
3J29|1|N|A|441
3J29|1|N|G|442
*
3J29|1|N|C|492
3J29|1|N|A|493
3J29|1|N|G|494
3J29|1|N|A|495
3J29|1|N|A|496
3J29|1|N|G|497
3J29|1|N|A|498
3J29|1|N|A|499
3J29|1|N|G|500
*
3J29|1|N|C|545
3J29|1|N|A|546
3J29|1|N|A|547
3J29|1|N|G|548

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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