J5_3J29_003

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CAAGUC*GGCGGACGGG*CAC*GAC*GGCAG

Length

27 nucleotides

Bulged bases

3J29|1|N|G|108, 3J29|1|N|A|109, 3J29|1|N|C|352, 3J29|1|N|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J29|1|N|C|58
3J29|1|N|A|59
3J29|1|N|A|60
3J29|1|N|G|61
3J29|1|N|U|62
3J29|1|N|C|63
*
3J29|1|N|G|104
3J29|1|N|G|105
3J29|1|N|C|106
3J29|1|N|G|107
3J29|1|N|G|108
3J29|1|N|A|109
3J29|1|N|C|110
3J29|1|N|G|111
3J29|1|N|G|112
3J29|1|N|G|113
*
3J29|1|N|C|314
3J29|1|N|A|315
3J29|1|N|C|316
*
3J29|1|N|G|337
3J29|1|N|A|338
3J29|1|N|C|339
*
3J29|1|N|G|350
3J29|1|N|G|351
3J29|1|N|C|352
3J29|1|N|A|353
3J29|1|N|G|354

Current chains

Chain N

16S rRNA

Nearby chains