J5_3J2A_002

3D structure

PDB id

3J2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J2A_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.2922

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3J2A|1|N|C|36
3J2A|1|N|U|37
3J2A|1|N|G|38
3J2A|1|N|G|39
*
3J2A|1|N|C|403
3J2A|1|N|G|404
3J2A|1|N|U|405
3J2A|1|N|G|406
*
3J2A|1|N|C|436
3J2A|1|N|U|437
3J2A|1|N|U|438
3J2A|1|N|U|439
3J2A|1|N|C|440
3J2A|1|N|A|441
3J2A|1|N|G|442
*
3J2A|1|N|C|492
3J2A|1|N|A|493
3J2A|1|N|G|494
3J2A|1|N|A|495
3J2A|1|N|A|496
3J2A|1|N|G|497
3J2A|1|N|A|498
3J2A|1|N|A|499
3J2A|1|N|G|500
*
3J2A|1|N|C|545
3J2A|1|N|A|546
3J2A|1|N|A|547
3J2A|1|N|G|548

Current chains

Chain N

16S rRNA

Nearby chains