J5_3J2B_003

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAAGUCGAA*UGGCGGACGGG*CAC*GAC*GGCAG

Length

31 nucleotides

Bulged bases

3J2B|1|N|G|64, 3J2B|1|N|A|65, 3J2B|1|N|G|108, 3J2B|1|N|A|109, 3J2B|1|N|C|352, 3J2B|1|N|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J2B|1|N|C|58
3J2B|1|N|A|59
3J2B|1|N|A|60
3J2B|1|N|G|61
3J2B|1|N|U|62
3J2B|1|N|C|63
3J2B|1|N|G|64
3J2B|1|N|A|65
3J2B|1|N|A|66
*
3J2B|1|N|U|103
3J2B|1|N|G|104
3J2B|1|N|G|105
3J2B|1|N|C|106
3J2B|1|N|G|107
3J2B|1|N|G|108
3J2B|1|N|A|109
3J2B|1|N|C|110
3J2B|1|N|G|111
3J2B|1|N|G|112
3J2B|1|N|G|113
*
3J2B|1|N|C|314
3J2B|1|N|A|315
3J2B|1|N|C|316
*
3J2B|1|N|G|337
3J2B|1|N|A|338
3J2B|1|N|C|339
*
3J2B|1|N|G|350
3J2B|1|N|G|351
3J2B|1|N|C|352
3J2B|1|N|A|353
3J2B|1|N|G|354

Current chains

Chain N

16S rRNA

Nearby chains