J5_3J2D_003

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

CAAGUC*GGCGGACGGG*CAC*GAC*GGCAG

Length

27 nucleotides

Bulged bases

3J2D|1|N|A|60, 3J2D|1|N|G|108, 3J2D|1|N|A|109, 3J2D|1|N|C|352, 3J2D|1|N|A|353

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J2D_003 not in the Motif Atlas

Homologous match to J5_6CZR_008

Geometric discrepancy: 0.5515

The information below is about J5_6CZR_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J2D|1|N|C|58
3J2D|1|N|A|59
3J2D|1|N|A|60
3J2D|1|N|G|61
3J2D|1|N|U|62
3J2D|1|N|C|63
*
3J2D|1|N|G|104
3J2D|1|N|G|105
3J2D|1|N|C|106
3J2D|1|N|G|107
3J2D|1|N|G|108
3J2D|1|N|A|109
3J2D|1|N|C|110
3J2D|1|N|G|111
3J2D|1|N|G|112
3J2D|1|N|G|113
*
3J2D|1|N|C|314
3J2D|1|N|A|315
3J2D|1|N|C|316
*
3J2D|1|N|G|337
3J2D|1|N|A|338
3J2D|1|N|C|339
*
3J2D|1|N|G|350
3J2D|1|N|G|351
3J2D|1|N|C|352
3J2D|1|N|A|353
3J2D|1|N|G|354

Current chains

Chain N

16S rRNA

Nearby chains