J5_3J2G_001

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J2G_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.3258

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3J2G|1|N|C|36
3J2G|1|N|U|37
3J2G|1|N|G|38
3J2G|1|N|G|39
*
3J2G|1|N|C|403
3J2G|1|N|G|404
3J2G|1|N|U|405
3J2G|1|N|G|406
*
3J2G|1|N|C|436
3J2G|1|N|U|437
3J2G|1|N|U|438
3J2G|1|N|U|439
3J2G|1|N|C|440
*
3J2G|1|N|G|497
3J2G|1|N|A|498
3J2G|1|N|A|499
3J2G|1|N|G|500
*
3J2G|1|N|C|545
3J2G|1|N|A|546
3J2G|1|N|A|547
3J2G|1|N|G|548

Current chains

Chain N

16S rRNA

Nearby chains