J5_3J2G_003

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

3J2G|1|N|G|108, 3J2G|1|N|A|109, 3J2G|1|N|C|352, 3J2G|1|N|A|353

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J2G_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.4218

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3J2G|1|N|C|58
3J2G|1|N|A|59
3J2G|1|N|A|60
3J2G|1|N|G|61
*
3J2G|1|N|C|106
3J2G|1|N|G|107
3J2G|1|N|G|108
3J2G|1|N|A|109
3J2G|1|N|C|110
3J2G|1|N|G|111
3J2G|1|N|G|112
3J2G|1|N|G|113
*
3J2G|1|N|C|314
3J2G|1|N|A|315
3J2G|1|N|C|316
*
3J2G|1|N|G|337
3J2G|1|N|A|338
3J2G|1|N|C|339
*
3J2G|1|N|G|350
3J2G|1|N|G|351
3J2G|1|N|C|352
3J2G|1|N|A|353
3J2G|1|N|G|354

Current chains

Chain N

16S rRNA

Nearby chains