J5_3J5L_004

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

3J5L|1|A|U|1758, 3J5L|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J5L_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.052

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J5L|1|A|G|1674
3J5L|1|A|C|1675
3J5L|1|A|A|1676
3J5L|1|A|A|1677
3J5L|1|A|A|1678
3J5L|1|A|A|1679
3J5L|1|A|U|1680
3J5L|1|A|G|1681
3J5L|1|A|G|1682
*
3J5L|1|A|C|1706
3J5L|1|A|G|1707
*
3J5L|1|A|U|1751
3J5L|1|A|C|1752
*
3J5L|1|A|G|1756
3J5L|1|A|A|1757
3J5L|1|A|U|1758
3J5L|1|A|A|1759
3J5L|1|A|C|1760
3J5L|1|A|C|1761
3J5L|1|A|A|1762
3J5L|1|A|G|1763
3J5L|1|A|C|1764
*
3J5L|1|A|G|1988
3J5L|1|A|G|1989
3J5L|1|A|C|1990

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19