J5_3J6X_001
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 3J6X|1|1S|A|541, 3J6X|1|1S|A|544
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|1S|C|31
3J6X|1|1S|U|32
3J6X|1|1S|U|33
3J6X|1|1S|G|34
3J6X|1|1S|U|35
*
3J6X|1|1S|A|473
3J6X|1|1S|A|474
3J6X|1|1S|A|475
3J6X|1|1S|U|476
3J6X|1|1S|A|477
3J6X|1|1S|A|478
3J6X|1|1S|C|479
*
3J6X|1|1S|G|509
3J6X|1|1S|G|510
3J6X|1|1S|A|511
3J6X|1|1S|A|512
3J6X|1|1S|U|513
3J6X|1|1S|G|514
3J6X|1|1S|A|515
3J6X|1|1S|G|516
*
3J6X|1|1S|C|536
3J6X|1|1S|G|537
3J6X|1|1S|A|538
3J6X|1|1S|G|539
3J6X|1|1S|G|540
3J6X|1|1S|A|541
3J6X|1|1S|A|542
3J6X|1|1S|C|543
3J6X|1|1S|A|544
3J6X|1|1S|A|545
3J6X|1|1S|U|546
*
3J6X|1|1S|A|592
3J6X|1|1S|U|593
3J6X|1|1S|A|594
3J6X|1|1S|G|595
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 30
- 40S ribosomal protein S30
- Chain S9
- 40S ribosomal protein S9
Coloring options: