J5_3J6X_005

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3J6X|1|1S|U|638, 3J6X|1|1S|U|694, 3J6X|1|1S|C|696, 3J6X|1|1S|C|697, 3J6X|1|1S|U|813, 3J6X|1|1S|G|815, 3J6X|1|1S|A|856

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|1S|A|636
3J6X|1|1S|C|637
3J6X|1|1S|U|638
3J6X|1|1S|U|639
3J6X|1|1S|U|640
3J6X|1|1S|G|641
*
3J6X|1|1S|U|693
3J6X|1|1S|U|694
3J6X|1|1S|U|695
3J6X|1|1S|C|696
3J6X|1|1S|C|697
3J6X|1|1S|U|698
*
3J6X|1|1S|A|740
3J6X|1|1S|C|741
3J6X|1|1S|U|742
3J6X|1|1S|U|743
3J6X|1|1S|U|744
*
3J6X|1|1S|A|807
3J6X|1|1S|U|808
3J6X|1|1S|A|809
3J6X|1|1S|G|810
3J6X|1|1S|A|811
3J6X|1|1S|A|812
3J6X|1|1S|U|813
3J6X|1|1S|A|814
3J6X|1|1S|G|815
3J6X|1|1S|G|816
3J6X|1|1S|A|817
*
3J6X|1|1S|U|854
3J6X|1|1S|A|855
3J6X|1|1S|A|856
3J6X|1|1S|U|857
3J6X|1|1S|G|858
3J6X|1|1S|A|859
3J6X|1|1S|U|860

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain 13

40S ribosomal protein S13

Chain 22

40S ribosomal protein S22

Chain 59

60S ribosomal protein L19

Chain S7

40S ribosomal protein S7