J5_3J6X_009
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAAAGGUUC*GGUUAG*CC*GGUCGUACUGAUAAC*GUC
- Length
- 35 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1523, 3J6X|1|2S|U|1840, 3J6X|1|2S|A|1841
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|2S|G|1488
3J6X|1|2S|A|1489
3J6X|1|2S|A|1490
3J6X|1|2S|A|1491
3J6X|1|2S|G|1492
3J6X|1|2S|G|1493
3J6X|1|2S|U|1494
3J6X|1|2S|U|1495
3J6X|1|2S|C|1496
*
3J6X|1|2S|G|1520
3J6X|1|2S|G|1521
3J6X|1|2S|U|1522
3J6X|1|2S|U|1523
3J6X|1|2S|A|1524
3J6X|1|2S|G|1525
*
3J6X|1|2S|C|1614
3J6X|1|2S|C|1615
*
3J6X|1|2S|G|1829
3J6X|1|2S|G|1830
3J6X|1|2S|U|1831
3J6X|1|2S|C|1832
3J6X|1|2S|G|1833
3J6X|1|2S|U|1834
3J6X|1|2S|A|1835
3J6X|1|2S|C|1836
3J6X|1|2S|U|1837
3J6X|1|2S|G|1838
3J6X|1|2S|A|1839
3J6X|1|2S|U|1840
3J6X|1|2S|A|1841
3J6X|1|2S|A|1842
3J6X|1|2S|C|1843
*
3J6X|1|2S|G|1852
3J6X|1|2S|U|1853
3J6X|1|2S|C|1854
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 59
- 60S ribosomal protein L19
- Chain 65
- 60S ribosomal protein L25
- Chain 74
- 60S ribosomal protein L34
- Chain 77
- 60S ribosomal protein L37
- Chain 78
- 60S ribosomal protein L38
- Chain 79
- 60S ribosomal protein L39
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: