Loop J5_3J6Y

3D structure

PDB id: 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description: S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 3J6Y|1|1S|U|128, 3J6Y|1|1S|U|132, 3J6Y|1|1S|U|134, 3J6Y|1|1S|A|135, 3J6Y|1|1S|A|140, 3J6Y|1|1S|U|141, 3J6Y|1|1S|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J6Y|1|1S|A|124
3J6Y|1|1S|U|125
3J6Y|1|1S|A|126
3J6Y|1|1S|G|127
3J6Y|1|1S|U|128
3J6Y|1|1S|U|129
3J6Y|1|1S|C|130
3J6Y|1|1S|C|131
3J6Y|1|1S|U|132
3J6Y|1|1S|U|133
3J6Y|1|1S|U|134
3J6Y|1|1S|A|135
3J6Y|1|1S|C|136
3J6Y|1|1S|U|137
3J6Y|1|1S|A|138
3J6Y|1|1S|C|139
3J6Y|1|1S|A|140
3J6Y|1|1S|U|141
3J6Y|1|1S|G|142
3J6Y|1|1S|G|143
*
3J6Y|1|1S|C|172
3J6Y|1|1S|A|173
3J6Y|1|1S|U|174
3J6Y|1|1S|G|175
3J6Y|1|1S|C|176
3J6Y|1|1S|U|177
3J6Y|1|1S|U|178
3J6Y|1|1S|A|179
3J6Y|1|1S|A|180
3J6Y|1|1S|A|181
3J6Y|1|1S|A|182
*
3J6Y|1|1S|U|203
3J6Y|1|1S|G|204
*
3J6Y|1|1S|C|263
3J6Y|1|1S|G|264
3J6Y|1|1S|A|265
*
3J6Y|1|1S|U|289
3J6Y|1|1S|G|290
3J6Y|1|1S|G|291
3J6Y|1|1S|U|292
3J6Y|1|1S|U|293

Current chains

Chain 1S: 18S ribosomal RNA

Nearby chains

Chain S4: 40S ribosomal protein S4
Chain S6: 40S ribosomal protein S6
Chain S8: 40S ribosomal protein S8

J5_3J6Y_003