J5_3J6Y_005

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3J6Y|1|1S|U|638, 3J6Y|1|1S|U|694, 3J6Y|1|1S|C|696, 3J6Y|1|1S|C|697, 3J6Y|1|1S|U|813, 3J6Y|1|1S|G|815, 3J6Y|1|1S|A|856

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|1S|A|636
3J6Y|1|1S|C|637
3J6Y|1|1S|U|638
3J6Y|1|1S|U|639
3J6Y|1|1S|U|640
3J6Y|1|1S|G|641
*
3J6Y|1|1S|U|693
3J6Y|1|1S|U|694
3J6Y|1|1S|U|695
3J6Y|1|1S|C|696
3J6Y|1|1S|C|697
3J6Y|1|1S|U|698
*
3J6Y|1|1S|A|740
3J6Y|1|1S|C|741
3J6Y|1|1S|U|742
3J6Y|1|1S|U|743
3J6Y|1|1S|U|744
*
3J6Y|1|1S|A|807
3J6Y|1|1S|U|808
3J6Y|1|1S|A|809
3J6Y|1|1S|G|810
3J6Y|1|1S|A|811
3J6Y|1|1S|A|812
3J6Y|1|1S|U|813
3J6Y|1|1S|A|814
3J6Y|1|1S|G|815
3J6Y|1|1S|G|816
3J6Y|1|1S|A|817
*
3J6Y|1|1S|U|854
3J6Y|1|1S|A|855
3J6Y|1|1S|A|856
3J6Y|1|1S|U|857
3J6Y|1|1S|G|858
3J6Y|1|1S|A|859
3J6Y|1|1S|U|860

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain 13

40S ribosomal protein S13

Chain 22

40S ribosomal protein S22

Chain 59

60S ribosomal protein L19

Chain S7

40S ribosomal protein S7