J5_3J6Y_006
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 3J6Y|1|8S|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6Y_006 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.1377
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|A|20
3J6Y|1|2S|G|21
3J6Y|1|2S|G|22
*
3J6Y|1|8S|C|35
3J6Y|1|8S|G|36
3J6Y|1|8S|A|37
3J6Y|1|8S|U|38
3J6Y|1|8S|G|39
3J6Y|1|8S|A|40
3J6Y|1|8S|A|41
3J6Y|1|8S|G|42
*
3J6Y|1|8S|U|102
3J6Y|1|8S|G|103
3J6Y|1|8S|A|104
3J6Y|1|8S|A|105
3J6Y|1|8S|C|106
3J6Y|1|8S|G|107
*
3J6Y|1|8S|C|115
3J6Y|1|8S|G|116
*
3J6Y|1|8S|C|137
3J6Y|1|8S|A|138
3J6Y|1|8S|U|139
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 65
- 60S ribosomal protein L25
- Chain 75
- 60S ribosomal protein L35
- Chain 77
- 60S ribosomal protein L37
- Chain 79
- 60S ribosomal protein L39
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