J5_3J6Y_010
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|2116, 3J6Y|1|2S|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J6Y_010 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1568
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6Y|1|2S|G|1906
3J6Y|1|2S|C|1907
3J6Y|1|2S|A|1908
3J6Y|1|2S|A|1909
3J6Y|1|2S|A|1910
3J6Y|1|2S|A|1911
3J6Y|1|2S|U|1912
3J6Y|1|2S|A|1913
3J6Y|1|2S|G|1914
*
3J6Y|1|2S|U|1938
3J6Y|1|2S|G|1939
*
3J6Y|1|2S|U|2109
3J6Y|1|2S|G|2110
*
3J6Y|1|2S|C|2114
3J6Y|1|2S|G|2115
3J6Y|1|2S|G|2116
3J6Y|1|2S|A|2117
3J6Y|1|2S|C|2118
3J6Y|1|2S|A|2119
3J6Y|1|2S|A|2120
3J6Y|1|2S|G|2121
3J6Y|1|2S|G|2122
*
3J6Y|1|2S|C|2331
3J6Y|1|2S|A|2332
3J6Y|1|2S|C|2333
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 59
- 60S ribosomal protein L19
- Chain 63
- 60S ribosomal protein L23
- Chain 64
- 60S ribosomal protein L24
- Chain L3
- 60S ribosomal protein L3
Coloring options: