J5_3J6Y_011

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

3J6Y|1|2S|A|2404, 3J6Y|1|2S|A|2817, 3J6Y|1|2S|U|2873, 3J6Y|1|2S|U|2978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|A|2399
3J6Y|1|2S|G|2400
3J6Y|1|2S|A|2401
3J6Y|1|2S|A|2402
3J6Y|1|2S|G|2403
3J6Y|1|2S|A|2404
3J6Y|1|2S|C|2405
3J6Y|1|2S|C|2406
*
3J6Y|1|2S|G|2815
3J6Y|1|2S|G|2816
3J6Y|1|2S|A|2817
3J6Y|1|2S|U|2818
3J6Y|1|2S|A|2819
3J6Y|1|2S|A|2820
3J6Y|1|2S|C|2821
3J6Y|1|2S|U|2822
3J6Y|1|2S|G|2823
*
3J6Y|1|2S|C|2867
3J6Y|1|2S|U|2868
3J6Y|1|2S|U|2869
3J6Y|1|2S|C|2870
3J6Y|1|2S|G|2871
3J6Y|1|2S|A|2872
3J6Y|1|2S|U|2873
3J6Y|1|2S|G|2874
3J6Y|1|2S|U|2875
*
3J6Y|1|2S|G|2952
3J6Y|1|2S|U|2953
3J6Y|1|2S|U|2954
3J6Y|1|2S|U|2955
3J6Y|1|2S|A|2956
3J6Y|1|2S|G|2957
*
3J6Y|1|2S|U|2975
3J6Y|1|2S|A|2976
3J6Y|1|2S|G|2977
3J6Y|1|2S|U|2978
3J6Y|1|2S|U|2979
3J6Y|1|2S|U|2980

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L29

Chain L2

60S ribosomal protein L2

Chain L3

60S ribosomal protein L3

Chain L4

60S ribosomal protein L4