J5_3J73_008
3D structure
- PDB id
- 3J73 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCGCUCGCUCCUCUCCCACUUGGAUAAC*GCUAAUACAUGCCGACGGGCGCUGAC*GGAUGCGUGCAUUUAU*AUAACCUCGGGCCGAU*ACGACC
- Length
- 93 nucleotides
- Bulged bases
- 3J73|1|S2|U|128, 3J73|1|S2|C|129, 3J73|1|S2|G|130, 3J73|1|S2|C|131, 3J73|1|S2|U|132, 3J73|1|S2|C|133, 3J73|1|S2|C|134, 3J73|1|S2|U|135, 3J73|1|S2|C|136, 3J73|1|S2|U|137, 3J73|1|S2|C|138, 3J73|1|S2|C|139, 3J73|1|S2|C|142, 3J73|1|S2|U|172, 3J73|1|S2|G|183, 3J73|1|S2|G|215, 3J73|1|S2|U|305, 3J73|1|S2|C|306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J73|1|S2|G|123
3J73|1|S2|U|124
3J73|1|S2|C|125
3J73|1|S2|G|126
3J73|1|S2|C|127
3J73|1|S2|U|128
3J73|1|S2|C|129
3J73|1|S2|G|130
3J73|1|S2|C|131
3J73|1|S2|U|132
3J73|1|S2|C|133
3J73|1|S2|C|134
3J73|1|S2|U|135
3J73|1|S2|C|136
3J73|1|S2|U|137
3J73|1|S2|C|138
3J73|1|S2|C|139
3J73|1|S2|C|140
3J73|1|S2|A|141
3J73|1|S2|C|142
3J73|1|S2|U|143
3J73|1|S2|U|144
3J73|1|S2|G|145
3J73|1|S2|G|146
3J73|1|S2|A|147
3J73|1|S2|U|148
3J73|1|S2|A|149
3J73|1|S2|A|150
3J73|1|S2|C|151
*
3J73|1|S2|G|167
3J73|1|S2|C|168
3J73|1|S2|U|169
3J73|1|S2|A|170
3J73|1|S2|A|171
3J73|1|S2|U|172
3J73|1|S2|A|173
3J73|1|S2|C|174
3J73|1|S2|A|175
3J73|1|S2|U|176
3J73|1|S2|G|177
3J73|1|S2|C|178
3J73|1|S2|C|179
3J73|1|S2|G|180
3J73|1|S2|A|181
3J73|1|S2|C|182
3J73|1|S2|G|183
3J73|1|S2|G|184
3J73|1|S2|G|185
3J73|1|S2|C|186
3J73|1|S2|G|187
3J73|1|S2|C|188
3J73|1|S2|U|189
3J73|1|S2|G|190
3J73|1|S2|A|191
3J73|1|S2|C|192
*
3J73|1|S2|G|207
3J73|1|S2|G|208
3J73|1|S2|A|209
3J73|1|S2|U|210
3J73|1|S2|G|211
3J73|1|S2|C|212
3J73|1|S2|G|213
3J73|1|S2|U|214
3J73|1|S2|G|215
3J73|1|S2|C|216
3J73|1|S2|A|217
3J73|1|S2|U|218
3J73|1|S2|U|219
3J73|1|S2|U|220
3J73|1|S2|A|221
3J73|1|S2|U|222
*
3J73|1|S2|A|299
3J73|1|S2|U|300
3J73|1|S2|A|301
3J73|1|S2|A|302
3J73|1|S2|C|303
3J73|1|S2|C|304
3J73|1|S2|U|305
3J73|1|S2|C|306
3J73|1|S2|G|307
3J73|1|S2|G|308
3J73|1|S2|G|309
3J73|1|S2|C|310
3J73|1|S2|C|311
3J73|1|S2|G|312
3J73|1|S2|A|313
3J73|1|S2|U|314
*
3J73|1|S2|A|336
3J73|1|S2|C|337
3J73|1|S2|G|338
3J73|1|S2|A|339
3J73|1|S2|C|340
3J73|1|S2|C|341
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- Ribosomal protein eS4
- Chain SG
- Ribosomal protein eS6
- Chain SI
- Ribosomal protein eS8
- Chain SL
- Ribosomal protein uS17
- Chain SY
- Ribosomal protein eS24
Coloring options: