J5_3J74_002

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAGGAGUC*GGAC*GUUCC*GGCCGCUGC*GCAGGUGCAGAUCUU

Length

41 nucleotides

Bulged bases

3J74|1|5|C|2289, 3J74|1|5|G|2343, 3J74|1|5|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J74|1|5|A|1333
3J74|1|5|A|1334
3J74|1|5|G|1335
3J74|1|5|G|1336
3J74|1|5|A|1337
3J74|1|5|G|1338
3J74|1|5|U|1339
3J74|1|5|C|1340
*
3J74|1|5|G|1516
3J74|1|5|G|1517
3J74|1|5|A|1518
3J74|1|5|C|1519
*
3J74|1|5|G|1658
3J74|1|5|U|1659
3J74|1|5|U|1660
3J74|1|5|C|1661
3J74|1|5|C|1662
*
3J74|1|5|G|2287
3J74|1|5|G|2288
3J74|1|5|C|2289
3J74|1|5|C|2290
3J74|1|5|G|2291
3J74|1|5|C|2292
3J74|1|5|U|2293
3J74|1|5|G|2294
3J74|1|5|C|2295
*
3J74|1|5|G|2339
3J74|1|5|C|2340
3J74|1|5|A|2341
3J74|1|5|G|2342
3J74|1|5|G|2343
3J74|1|5|U|2344
3J74|1|5|G|2345
3J74|1|5|C|2346
3J74|1|5|A|2347
3J74|1|5|G|2348
3J74|1|5|A|2349
3J74|1|5|U|2350
3J74|1|5|C|2351
3J74|1|5|U|2352
3J74|1|5|U|2353

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Ribosomal protein uL4

Chain L

Ribosomal protein eL13

Chain Q

Ribosomal protein eL18

Chain a

Ribosomal protein uL15

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28