J5_3J74_007

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUGGAUAAC*GCUAAUACAUGCCGACGGGCGCUGAC*GGAUGCGUGCAUUUAUC*GAUAACCUCGGGCCGAUC*GACGACC

Length

97 nucleotides

Bulged bases

3J74|1|S2|U|128, 3J74|1|S2|C|129, 3J74|1|S2|G|130, 3J74|1|S2|C|131, 3J74|1|S2|U|132, 3J74|1|S2|C|133, 3J74|1|S2|C|134, 3J74|1|S2|U|135, 3J74|1|S2|C|136, 3J74|1|S2|U|137, 3J74|1|S2|C|138, 3J74|1|S2|C|139, 3J74|1|S2|C|142, 3J74|1|S2|U|172, 3J74|1|S2|G|183, 3J74|1|S2|G|215, 3J74|1|S2|U|305, 3J74|1|S2|C|306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J74|1|S2|G|123
3J74|1|S2|U|124
3J74|1|S2|C|125
3J74|1|S2|G|126
3J74|1|S2|C|127
3J74|1|S2|U|128
3J74|1|S2|C|129
3J74|1|S2|G|130
3J74|1|S2|C|131
3J74|1|S2|U|132
3J74|1|S2|C|133
3J74|1|S2|C|134
3J74|1|S2|U|135
3J74|1|S2|C|136
3J74|1|S2|U|137
3J74|1|S2|C|138
3J74|1|S2|C|139
3J74|1|S2|C|140
3J74|1|S2|A|141
3J74|1|S2|C|142
3J74|1|S2|U|143
3J74|1|S2|U|144
3J74|1|S2|G|145
3J74|1|S2|G|146
3J74|1|S2|A|147
3J74|1|S2|U|148
3J74|1|S2|A|149
3J74|1|S2|A|150
3J74|1|S2|C|151
*
3J74|1|S2|G|167
3J74|1|S2|C|168
3J74|1|S2|U|169
3J74|1|S2|A|170
3J74|1|S2|A|171
3J74|1|S2|U|172
3J74|1|S2|A|173
3J74|1|S2|C|174
3J74|1|S2|A|175
3J74|1|S2|U|176
3J74|1|S2|G|177
3J74|1|S2|C|178
3J74|1|S2|C|179
3J74|1|S2|G|180
3J74|1|S2|A|181
3J74|1|S2|C|182
3J74|1|S2|G|183
3J74|1|S2|G|184
3J74|1|S2|G|185
3J74|1|S2|C|186
3J74|1|S2|G|187
3J74|1|S2|C|188
3J74|1|S2|U|189
3J74|1|S2|G|190
3J74|1|S2|A|191
3J74|1|S2|C|192
*
3J74|1|S2|G|207
3J74|1|S2|G|208
3J74|1|S2|A|209
3J74|1|S2|U|210
3J74|1|S2|G|211
3J74|1|S2|C|212
3J74|1|S2|G|213
3J74|1|S2|U|214
3J74|1|S2|G|215
3J74|1|S2|C|216
3J74|1|S2|A|217
3J74|1|S2|U|218
3J74|1|S2|U|219
3J74|1|S2|U|220
3J74|1|S2|A|221
3J74|1|S2|U|222
3J74|1|S2|C|223
*
3J74|1|S2|G|298
3J74|1|S2|A|299
3J74|1|S2|U|300
3J74|1|S2|A|301
3J74|1|S2|A|302
3J74|1|S2|C|303
3J74|1|S2|C|304
3J74|1|S2|U|305
3J74|1|S2|C|306
3J74|1|S2|G|307
3J74|1|S2|G|308
3J74|1|S2|G|309
3J74|1|S2|C|310
3J74|1|S2|C|311
3J74|1|S2|G|312
3J74|1|S2|A|313
3J74|1|S2|U|314
3J74|1|S2|C|315
*
3J74|1|S2|G|335
3J74|1|S2|A|336
3J74|1|S2|C|337
3J74|1|S2|G|338
3J74|1|S2|A|339
3J74|1|S2|C|340
3J74|1|S2|C|341

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17

Chain SY

Ribosomal protein eS24