J5_3J77_004

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3J77|1|1S|U|638, 3J77|1|1S|U|694, 3J77|1|1S|C|696, 3J77|1|1S|C|697, 3J77|1|1S|U|813, 3J77|1|1S|G|815, 3J77|1|1S|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J77|1|1S|A|636
3J77|1|1S|C|637
3J77|1|1S|U|638
3J77|1|1S|U|639
3J77|1|1S|U|640
3J77|1|1S|G|641
*
3J77|1|1S|U|693
3J77|1|1S|U|694
3J77|1|1S|U|695
3J77|1|1S|C|696
3J77|1|1S|C|697
3J77|1|1S|U|698
*
3J77|1|1S|A|740
3J77|1|1S|C|741
3J77|1|1S|U|742
3J77|1|1S|U|743
3J77|1|1S|U|744
*
3J77|1|1S|A|807
3J77|1|1S|U|808
3J77|1|1S|A|809
3J77|1|1S|G|810
3J77|1|1S|A|811
3J77|1|1S|A|812
3J77|1|1S|U|813
3J77|1|1S|A|814
3J77|1|1S|G|815
3J77|1|1S|G|816
3J77|1|1S|A|817
*
3J77|1|1S|U|854
3J77|1|1S|A|855
3J77|1|1S|A|856
3J77|1|1S|U|857
3J77|1|1S|G|858
3J77|1|1S|A|859
3J77|1|1S|U|860

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain 13

40S ribosomal protein S13

Chain 22

40S ribosomal protein S22

Chain 69

60S ribosomal protein L19

Chain S7

40S ribosomal protein S7