J5_3J77_006
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 3J77|1|2S|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J77_006 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1088
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|2S|G|658
3J77|1|2S|G|659
3J77|1|2S|A|660
3J77|1|2S|G|661
3J77|1|2S|U|662
3J77|1|2S|C|663
*
3J77|1|2S|G|799
3J77|1|2S|G|800
3J77|1|2S|A|801
3J77|1|2S|C|802
*
3J77|1|2S|G|941
3J77|1|2S|U|942
3J77|1|2S|U|943
3J77|1|2S|C|944
*
3J77|1|2S|G|1375
3J77|1|2S|C|1376
*
3J77|1|2S|G|1431
3J77|1|2S|C|1432
3J77|1|2S|A|1433
3J77|1|2S|G|1434
3J77|1|2S|A|1435
3J77|1|2S|U|1436
3J77|1|2S|C|1437
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 65
- 60S ribosomal protein L15
- Chain 78
- 60S ribosomal protein L28
- Chain 82
- 60S ribosomal protein L32
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
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