Loop J5_3J78

3D structure

PDB id: 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 3J78|1|1S|U|132, 3J78|1|1S|U|133, 3J78|1|1S|U|134, 3J78|1|1S|A|135, 3J78|1|1S|A|140, 3J78|1|1S|U|141, 3J78|1|1S|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J78|1|1S|A|124
3J78|1|1S|U|125
3J78|1|1S|A|126
3J78|1|1S|G|127
3J78|1|1S|U|128
3J78|1|1S|U|129
3J78|1|1S|C|130
3J78|1|1S|C|131
3J78|1|1S|U|132
3J78|1|1S|U|133
3J78|1|1S|U|134
3J78|1|1S|A|135
3J78|1|1S|C|136
3J78|1|1S|U|137
3J78|1|1S|A|138
3J78|1|1S|C|139
3J78|1|1S|A|140
3J78|1|1S|U|141
3J78|1|1S|G|142
3J78|1|1S|G|143
*
3J78|1|1S|C|172
3J78|1|1S|A|173
3J78|1|1S|U|174
3J78|1|1S|G|175
3J78|1|1S|C|176
3J78|1|1S|U|177
3J78|1|1S|U|178
3J78|1|1S|A|179
3J78|1|1S|A|180
3J78|1|1S|A|181
3J78|1|1S|A|182
*
3J78|1|1S|U|203
3J78|1|1S|G|204
*
3J78|1|1S|C|263
3J78|1|1S|G|264
3J78|1|1S|A|265
3J78|1|1S|A|266
3J78|1|1S|U|267
*
3J78|1|1S|A|288
3J78|1|1S|U|289
3J78|1|1S|G|290
3J78|1|1S|G|291
3J78|1|1S|U|292
3J78|1|1S|U|293

Current chains

Chain 1S: 18S ribosomal RNA

Nearby chains

Chain S4: 40S ribosomal protein S4
Chain S6: 40S ribosomal protein S6
Chain S8: 40S ribosomal protein S8

J5_3J78_004