J5_3J78_005

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3J78|1|1S|U|639, 3J78|1|1S|U|694, 3J78|1|1S|C|696, 3J78|1|1S|C|697, 3J78|1|1S|U|813, 3J78|1|1S|G|815, 3J78|1|1S|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J78|1|1S|A|636
3J78|1|1S|C|637
3J78|1|1S|U|638
3J78|1|1S|U|639
3J78|1|1S|U|640
3J78|1|1S|G|641
*
3J78|1|1S|U|693
3J78|1|1S|U|694
3J78|1|1S|U|695
3J78|1|1S|C|696
3J78|1|1S|C|697
3J78|1|1S|U|698
*
3J78|1|1S|A|740
3J78|1|1S|C|741
3J78|1|1S|U|742
3J78|1|1S|U|743
3J78|1|1S|U|744
*
3J78|1|1S|A|807
3J78|1|1S|U|808
3J78|1|1S|A|809
3J78|1|1S|G|810
3J78|1|1S|A|811
3J78|1|1S|A|812
3J78|1|1S|U|813
3J78|1|1S|A|814
3J78|1|1S|G|815
3J78|1|1S|G|816
3J78|1|1S|A|817
*
3J78|1|1S|U|854
3J78|1|1S|A|855
3J78|1|1S|A|856
3J78|1|1S|U|857
3J78|1|1S|G|858
3J78|1|1S|A|859
3J78|1|1S|U|860

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain 13

40S ribosomal protein S13

Chain 22

40S ribosomal protein S22

Chain 69

60S ribosomal protein L19

Chain S7

40S ribosomal protein S7