J5_3J78_011
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 3J78|1|2S|A|2404, 3J78|1|2S|A|2817, 3J78|1|2S|U|2818, 3J78|1|2S|U|2954, 3J78|1|2S|U|2978, 3J78|1|2S|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J78|1|2S|A|2399
3J78|1|2S|G|2400
3J78|1|2S|A|2401
3J78|1|2S|A|2402
3J78|1|2S|G|2403
3J78|1|2S|A|2404
3J78|1|2S|C|2405
3J78|1|2S|C|2406
*
3J78|1|2S|G|2815
3J78|1|2S|G|2816
3J78|1|2S|A|2817
3J78|1|2S|U|2818
3J78|1|2S|A|2819
3J78|1|2S|A|2820
3J78|1|2S|C|2821
3J78|1|2S|U|2822
3J78|1|2S|G|2823
*
3J78|1|2S|C|2867
3J78|1|2S|U|2868
3J78|1|2S|U|2869
3J78|1|2S|C|2870
3J78|1|2S|G|2871
3J78|1|2S|A|2872
3J78|1|2S|U|2873
3J78|1|2S|G|2874
3J78|1|2S|U|2875
*
3J78|1|2S|G|2952
3J78|1|2S|U|2953
3J78|1|2S|U|2954
3J78|1|2S|U|2955
3J78|1|2S|A|2956
3J78|1|2S|G|2957
*
3J78|1|2S|U|2975
3J78|1|2S|A|2976
3J78|1|2S|G|2977
3J78|1|2S|U|2978
3J78|1|2S|U|2979
3J78|1|2S|U|2980
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 79
- 60S ribosomal protein L29
- Chain L2
- 60S ribosomal protein L2
- Chain L3
- 60S ribosomal protein L3
- Chain L4
- 60S ribosomal protein L4
- Chain PT
- Transfer RNA; tRNA
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