J5_3J79_002

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUC*GGAC*GUUA*UC*GCAGAUC

Length

23 nucleotides

Bulged bases

3J79|1|A|U|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J79_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0755

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_63811.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

3J79|1|A|G|736
3J79|1|A|G|737
3J79|1|A|A|738
3J79|1|A|G|739
3J79|1|A|U|740
3J79|1|A|C|741
*
3J79|1|A|G|918
3J79|1|A|G|919
3J79|1|A|A|920
3J79|1|A|C|921
*
3J79|1|A|G|1060
3J79|1|A|U|1061
3J79|1|A|U|1062
3J79|1|A|A|1063
*
3J79|1|A|U|1524
3J79|1|A|C|1525
*
3J79|1|A|G|1580
3J79|1|A|C|1581
3J79|1|A|A|1582
3J79|1|A|G|1583
3J79|1|A|A|1584
3J79|1|A|U|1585
3J79|1|A|C|1586

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein eL28

Chain 8

60S ribosomal protein eL32

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein uL4

Chain L

60S ribosomal protein eL13

Chain O

60S ribosomal protein uL15

Chain P

60S ribosomal protein eL15