J5_3J79_004
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 3J79|1|A|A|2697, 3J79|1|A|A|3176, 3J79|1|A|U|3337, 3J79|1|A|U|3338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|A|2692
3J79|1|A|G|2693
3J79|1|A|A|2694
3J79|1|A|A|2695
3J79|1|A|G|2696
3J79|1|A|A|2697
3J79|1|A|C|2698
3J79|1|A|C|2699
*
3J79|1|A|G|3174
3J79|1|A|G|3175
3J79|1|A|A|3176
3J79|1|A|U|3177
3J79|1|A|A|3178
3J79|1|A|A|3179
3J79|1|A|C|3180
3J79|1|A|U|3181
3J79|1|A|G|3182
*
3J79|1|A|C|3226
3J79|1|A|U|3227
3J79|1|A|U|3228
3J79|1|A|C|3229
3J79|1|A|G|3230
3J79|1|A|A|3231
3J79|1|A|U|3232
3J79|1|A|G|3233
3J79|1|A|U|3234
3J79|1|A|C|3235
*
3J79|1|A|G|3310
3J79|1|A|G|3311
3J79|1|A|U|3312
3J79|1|A|U|3313
3J79|1|A|U|3314
3J79|1|A|A|3315
3J79|1|A|G|3316
*
3J79|1|A|U|3334
3J79|1|A|A|3335
3J79|1|A|G|3336
3J79|1|A|U|3337
3J79|1|A|U|3338
3J79|1|A|U|3339
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain D
- 60S ribosomal protein uL2
- Chain E
- 60S ribosomal protein uL3
- Chain F
- 60S ribosomal protein uL4
- Chain O
- 60S ribosomal protein uL15
- Chain W
- 60S ribosomal protein uL22
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