3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AUCUUGGGAGCG*CCCGCCG*CAUU*AUGGAAUAG*CAUGAU
Length
38 nucleotides
Bulged bases
3J7P|1|S2|C|687, 3J7P|1|S2|U|871, 3J7P|1|S2|A|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7P|1|S2|A|685
3J7P|1|S2|U|686
3J7P|1|S2|C|687
3J7P|1|S2|U|688
3J7P|1|S2|U|689
3J7P|1|S2|G|690
3J7P|1|S2|G|691
3J7P|1|S2|G|692
3J7P|1|S2|A|693
3J7P|1|S2|G|694
3J7P|1|S2|C|695
3J7P|1|S2|G|696
*
3J7P|1|S2|C|734
3J7P|1|S2|C|735
3J7P|1|S2|C|736
3J7P|1|S2|G|737
3J7P|1|S2|C|738
3J7P|1|S2|C|739
3J7P|1|S2|G|744
*
3J7P|1|S2|C|797
3J7P|1|S2|A|798
3J7P|1|S2|U|799
3J7P|1|S2|U|800
*
3J7P|1|S2|A|865
3J7P|1|S2|U|866
3J7P|1|S2|G|867
3J7P|1|S2|G|868
3J7P|1|S2|A|869
3J7P|1|S2|A|870
3J7P|1|S2|U|871
3J7P|1|S2|A|872
3J7P|1|S2|G|873
*
3J7P|1|S2|C|912
3J7P|1|S2|A|913
3J7P|1|S2|U|914
3J7P|1|S2|G|915
3J7P|1|S2|A|916
3J7P|1|S2|U|917

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain R
Ribosomal protein eL19
Chain SH
Ribosomal protein eS7
Chain SL
Ribosomal protein uS17
Chain SN
Ribosomal protein uS15
Chain SW
Ribosomal protein uS8
Chain SX
Ribosomal protein uS12

Coloring options:

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