3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAGUCU*AGGAC*GUUC*GCC*GCAGAUC
Length
26 nucleotides
Bulged bases
3J7P|1|5|C|2289, 3J7P|1|5|U|2350
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7P|1|5|G|1335
3J7P|1|5|G|1336
3J7P|1|5|A|1337
3J7P|1|5|G|1338
3J7P|1|5|U|1339
3J7P|1|5|C|1340
3J7P|1|5|U|1341
*
3J7P|1|5|A|1515
3J7P|1|5|G|1516
3J7P|1|5|G|1517
3J7P|1|5|A|1518
3J7P|1|5|C|1519
*
3J7P|1|5|G|1658
3J7P|1|5|U|1659
3J7P|1|5|U|1660
3J7P|1|5|C|1661
*
3J7P|1|5|G|2288
3J7P|1|5|C|2289
3J7P|1|5|C|2290
*
3J7P|1|5|G|2345
3J7P|1|5|C|2346
3J7P|1|5|A|2347
3J7P|1|5|G|2348
3J7P|1|5|A|2349
3J7P|1|5|U|2350
3J7P|1|5|C|2351

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
Ribosomal protein uL4
Chain L
Ribosomal protein eL13
Chain N
Ribosomal protein eL15
Chain a
Ribosomal protein uL15
Chain e
Ribosomal protein eL32
Chain r
Ribosomal protein eL28

Coloring options:

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