J5_3J7P_014

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUCU*AGGAC*GUUC*GCC*GCAGAUC

Length

26 nucleotides

Bulged bases

3J7P|1|5|C|2289, 3J7P|1|5|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7P|1|5|G|1335
3J7P|1|5|G|1336
3J7P|1|5|A|1337
3J7P|1|5|G|1338
3J7P|1|5|U|1339
3J7P|1|5|C|1340
3J7P|1|5|U|1341
*
3J7P|1|5|A|1515
3J7P|1|5|G|1516
3J7P|1|5|G|1517
3J7P|1|5|A|1518
3J7P|1|5|C|1519
*
3J7P|1|5|G|1658
3J7P|1|5|U|1659
3J7P|1|5|U|1660
3J7P|1|5|C|1661
*
3J7P|1|5|G|2288
3J7P|1|5|C|2289
3J7P|1|5|C|2290
*
3J7P|1|5|G|2345
3J7P|1|5|C|2346
3J7P|1|5|A|2347
3J7P|1|5|G|2348
3J7P|1|5|A|2349
3J7P|1|5|U|2350
3J7P|1|5|C|2351

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Ribosomal protein uL4

Chain L

Ribosomal protein eL13

Chain N

Ribosomal protein eL15

Chain a

Ribosomal protein uL15

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28