J5_3J7P_016

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCUCGCUCCUCUCCCACUU*AUGCCGACGGGCG*CGUGCAU*ACCUCGGGCCGAUC*GACG

Length

58 nucleotides

Bulged bases

3J7P|1|S2|U|128, 3J7P|1|S2|C|129, 3J7P|1|S2|G|130, 3J7P|1|S2|C|131, 3J7P|1|S2|U|132, 3J7P|1|S2|C|133, 3J7P|1|S2|C|134, 3J7P|1|S2|U|135, 3J7P|1|S2|C|136, 3J7P|1|S2|U|137, 3J7P|1|S2|C|138, 3J7P|1|S2|C|139, 3J7P|1|S2|C|142, 3J7P|1|S2|G|183, 3J7P|1|S2|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7P|1|S2|C|125
3J7P|1|S2|G|126
3J7P|1|S2|C|127
3J7P|1|S2|U|128
3J7P|1|S2|C|129
3J7P|1|S2|G|130
3J7P|1|S2|C|131
3J7P|1|S2|U|132
3J7P|1|S2|C|133
3J7P|1|S2|C|134
3J7P|1|S2|U|135
3J7P|1|S2|C|136
3J7P|1|S2|U|137
3J7P|1|S2|C|138
3J7P|1|S2|C|139
3J7P|1|S2|C|140
3J7P|1|S2|A|141
3J7P|1|S2|C|142
3J7P|1|S2|U|143
3J7P|1|S2|U|144
*
3J7P|1|S2|A|175
3J7P|1|S2|U|176
3J7P|1|S2|G|177
3J7P|1|S2|C|178
3J7P|1|S2|C|179
3J7P|1|S2|G|180
3J7P|1|S2|A|181
3J7P|1|S2|C|182
3J7P|1|S2|G|183
3J7P|1|S2|G|184
3J7P|1|S2|G|185
3J7P|1|S2|C|186
3J7P|1|S2|G|187
*
3J7P|1|S2|C|212
3J7P|1|S2|G|213
3J7P|1|S2|U|214
3J7P|1|S2|G|215
3J7P|1|S2|C|216
3J7P|1|S2|A|217
3J7P|1|S2|U|218
*
3J7P|1|S2|A|302
3J7P|1|S2|C|303
3J7P|1|S2|C|304
3J7P|1|S2|U|305
3J7P|1|S2|C|306
3J7P|1|S2|G|307
3J7P|1|S2|G|308
3J7P|1|S2|G|309
3J7P|1|S2|C|310
3J7P|1|S2|C|311
3J7P|1|S2|G|312
3J7P|1|S2|A|313
3J7P|1|S2|U|314
3J7P|1|S2|C|315
*
3J7P|1|S2|G|335
3J7P|1|S2|A|336
3J7P|1|S2|C|337
3J7P|1|S2|G|338

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8