J5_3J8G_001

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3J8G|1|B|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J8G_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1849

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3J8G|1|B|C|47
3J8G|1|B|G|48
3J8G|1|B|A|49
3J8G|1|B|U|50
3J8G|1|B|G|51
3J8G|1|B|A|52
3J8G|1|B|A|53
3J8G|1|B|G|54
*
3J8G|1|B|C|116
3J8G|1|B|G|117
3J8G|1|B|A|118
3J8G|1|B|A|119
3J8G|1|B|U|120
3J8G|1|B|G|121
*
3J8G|1|B|C|130
3J8G|1|B|A|131
*
3J8G|1|B|U|148
3J8G|1|B|A|149
3J8G|1|B|U|150
*
3J8G|1|B|A|176
3J8G|1|B|G|177
3J8G|1|B|G|178

Current chains

Chain B

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34