J5_3J92_005
3D structure
- PDB id
- 3J92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure and assembly pathway of the ribosome quality control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 3J92|1|5|A|4394, 3J92|1|5|U|4555, 3J92|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J92|1|5|A|3903
3J92|1|5|G|3904
3J92|1|5|A|3905
3J92|1|5|A|3906
3J92|1|5|G|3907
3J92|1|5|A|3908
3J92|1|5|C|3909
3J92|1|5|C|3910
*
3J92|1|5|G|4392
3J92|1|5|G|4393
3J92|1|5|A|4394
3J92|1|5|U|4395
3J92|1|5|A|4396
3J92|1|5|A|4397
3J92|1|5|C|4398
3J92|1|5|U|4399
3J92|1|5|G|4400
*
3J92|1|5|C|4444
3J92|1|5|U|4445
3J92|1|5|U|4446
3J92|1|5|C|4447
3J92|1|5|G|4448
3J92|1|5|A|4449
3J92|1|5|U|4450
3J92|1|5|G|4451
3J92|1|5|U|4452
3J92|1|5|C|4453
*
3J92|1|5|G|4528
3J92|1|5|G|4529
3J92|1|5|U|4530
3J92|1|5|U|4531
3J92|1|5|U|4532
3J92|1|5|A|4533
3J92|1|5|G|4534
*
3J92|1|5|U|4552
3J92|1|5|A|4553
3J92|1|5|G|4554
3J92|1|5|U|4555
3J92|1|5|U|4556
3J92|1|5|U|4557
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- nascent chain
- Chain 2
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain a
- uL15
- Chain b
- eL29
Coloring options: