J5_3J9W_001

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUGU*AAG*CAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9W|1|AA|C|38
3J9W|1|AA|U|39
3J9W|1|AA|G|40
3J9W|1|AA|G|41
*
3J9W|1|AA|C|411
3J9W|1|AA|G|412
3J9W|1|AA|U|413
3J9W|1|AA|G|414
*
3J9W|1|AA|C|444
3J9W|1|AA|U|445
3J9W|1|AA|G|446
3J9W|1|AA|U|447
*
3J9W|1|AA|A|507
3J9W|1|AA|A|508
3J9W|1|AA|G|509
*
3J9W|1|AA|C|554
3J9W|1|AA|A|555
3J9W|1|AA|A|556
3J9W|1|AA|G|557

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein uS4

Chain AL

30S ribosomal protein uS12