J5_3J9W_002
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 3J9W|1|AA|A|107, 3J9W|1|AA|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9W_002 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0838
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|AA|C|60
3J9W|1|AA|A|61
3J9W|1|AA|A|62
3J9W|1|AA|G|63
*
3J9W|1|AA|C|104
3J9W|1|AA|G|105
3J9W|1|AA|G|106
3J9W|1|AA|A|107
3J9W|1|AA|C|108
3J9W|1|AA|G|109
3J9W|1|AA|G|110
3J9W|1|AA|G|111
*
3J9W|1|AA|C|322
3J9W|1|AA|A|323
3J9W|1|AA|C|324
*
3J9W|1|AA|G|345
3J9W|1|AA|A|346
3J9W|1|AA|C|347
*
3J9W|1|AA|G|358
3J9W|1|AA|G|359
3J9W|1|AA|C|360
3J9W|1|AA|A|361
3J9W|1|AA|G|362
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AP
- 30S ribosomal protein bS16
- Chain AT
- 30S ribosomal protein bS20
- Chain BN
- 50S ribosomal protein uL14
- Chain BS
- 50S ribosomal protein bL19
Coloring options: