J5_3J9W_006
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 3J9W|1|BA|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9W_006 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1505
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|BA|C|628
3J9W|1|BA|G|629
3J9W|1|BA|A|630
3J9W|1|BA|G|631
3J9W|1|BA|U|632
3J9W|1|BA|U|633
*
3J9W|1|BA|A|715
3J9W|1|BA|G|716
3J9W|1|BA|A|717
3J9W|1|BA|C|718
*
3J9W|1|BA|G|856
3J9W|1|BA|U|857
3J9W|1|BA|U|858
3J9W|1|BA|C|859
*
3J9W|1|BA|G|1236
3J9W|1|BA|C|1237
*
3J9W|1|BA|G|1290
3J9W|1|BA|A|1291
3J9W|1|BA|G|1292
3J9W|1|BA|A|1293
3J9W|1|BA|A|1294
3J9W|1|BA|U|1295
3J9W|1|BA|G|1296
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B7
- 50S ribosomal protein bL35
- Chain BF
- 50S ribosomal protein uL4
- Chain BO
- 50S ribosomal protein uL15
- Chain BT
- 50S ribosomal protein bL20
- Chain BU
- 50S ribosomal protein bL21
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