J5_3J9W_008
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 3J9W|1|BA|A|2091, 3J9W|1|BA|A|2477, 3J9W|1|BA|U|2478, 3J9W|1|BA|U|2638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J9W|1|BA|G|2086
3J9W|1|BA|A|2087
3J9W|1|BA|A|2088
3J9W|1|BA|A|2089
3J9W|1|BA|G|2090
3J9W|1|BA|A|2091
3J9W|1|BA|C|2092
3J9W|1|BA|C|2093
*
3J9W|1|BA|G|2475
3J9W|1|BA|G|2476
3J9W|1|BA|A|2477
3J9W|1|BA|U|2478
3J9W|1|BA|A|2479
3J9W|1|BA|A|2480
3J9W|1|BA|C|2481
3J9W|1|BA|A|2482
*
3J9W|1|BA|U|2529
3J9W|1|BA|C|2530
3J9W|1|BA|G|2531
3J9W|1|BA|A|2532
3J9W|1|BA|U|2533
3J9W|1|BA|G|2534
3J9W|1|BA|U|2535
*
3J9W|1|BA|G|2612
3J9W|1|BA|U|2613
3J9W|1|BA|U|2614
3J9W|1|BA|C|2615
3J9W|1|BA|A|2616
3J9W|1|BA|G|2617
*
3J9W|1|BA|C|2635
3J9W|1|BA|G|2636
3J9W|1|BA|G|2637
3J9W|1|BA|U|2638
3J9W|1|BA|C|2639
3J9W|1|BA|C|2640
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain AZ
- MifM
- Chain B4
- 50S ribosomal protein bL32
- Chain BD
- 50S ribosomal protein uL2
- Chain BE
- 50S ribosomal protein uL3
- Chain BF
- 50S ribosomal protein uL4
- Chain BO
- 50S ribosomal protein uL15
- Chain BP
- 50S ribosomal protein uL16
- Chain BZ
- 50S ribosomal protein bL27
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