J5_3J9Z_001

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3J9Z|1|LA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3J9Z_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0858

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3J9Z|1|LA|C|47
3J9Z|1|LA|G|48
3J9Z|1|LA|A|49
3J9Z|1|LA|U|50
3J9Z|1|LA|G|51
3J9Z|1|LA|A|52
3J9Z|1|LA|A|53
3J9Z|1|LA|G|54
*
3J9Z|1|LA|C|116
3J9Z|1|LA|G|117
3J9Z|1|LA|A|118
3J9Z|1|LA|A|119
3J9Z|1|LA|U|120
3J9Z|1|LA|G|121
*
3J9Z|1|LA|C|130
3J9Z|1|LA|A|131
*
3J9Z|1|LA|U|148
3J9Z|1|LA|A|149
3J9Z|1|LA|U|150
*
3J9Z|1|LA|A|176
3J9Z|1|LA|G|177
3J9Z|1|LA|G|178

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L34