J5_3J9Z_009
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 3J9Z|1|SA|A|109, 3J9Z|1|SA|C|352, 3J9Z|1|SA|A|353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9Z_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1231
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J9Z|1|SA|C|58
3J9Z|1|SA|A|59
3J9Z|1|SA|A|60
3J9Z|1|SA|G|61
*
3J9Z|1|SA|C|106
3J9Z|1|SA|G|107
3J9Z|1|SA|G|108
3J9Z|1|SA|A|109
3J9Z|1|SA|C|110
3J9Z|1|SA|G|111
3J9Z|1|SA|G|112
3J9Z|1|SA|G|113
*
3J9Z|1|SA|C|314
3J9Z|1|SA|A|315
3J9Z|1|SA|C|316
*
3J9Z|1|SA|G|337
3J9Z|1|SA|A|338
3J9Z|1|SA|C|339
*
3J9Z|1|SA|G|350
3J9Z|1|SA|G|351
3J9Z|1|SA|C|352
3J9Z|1|SA|A|353
3J9Z|1|SA|G|354
Current chains
- Chain SA
- 16S ribosomal RNA
Nearby chains
- Chain LG
- 50S ribosomal protein L14
- Chain LM
- 50S ribosomal protein L19
- Chain SP
- 30S ribosomal protein S16
- Chain ST
- 30S ribosomal protein S20
Coloring options: