J5_3JA1_001

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3JA1|1|LA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3JA1_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.135

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JA1|1|LA|C|47
3JA1|1|LA|G|48
3JA1|1|LA|A|49
3JA1|1|LA|U|50
3JA1|1|LA|G|51
3JA1|1|LA|A|52
3JA1|1|LA|A|53
3JA1|1|LA|G|54
*
3JA1|1|LA|C|116
3JA1|1|LA|G|117
3JA1|1|LA|A|118
3JA1|1|LA|A|119
3JA1|1|LA|U|120
3JA1|1|LA|G|121
*
3JA1|1|LA|C|130
3JA1|1|LA|A|131
*
3JA1|1|LA|U|148
3JA1|1|LA|A|149
3JA1|1|LA|U|150
*
3JA1|1|LA|A|176
3JA1|1|LA|G|177
3JA1|1|LA|G|178

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34