3D structure

PDB id
3JAH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.45 Å

Loop

Sequence
UUGA*UUUG*CA*UG*CAGAAAA
Length
19 nucleotides
Bulged bases
3JAH|1|5|G|3922, 3JAH|1|5|A|4376, 3JAH|1|5|G|4377, 3JAH|1|5|A|4378, 3JAH|1|5|A|4379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_3JAH_005 not in the Motif Atlas
Homologous match to J5_8C3A_006
Geometric discrepancy: 0.3033
The information below is about J5_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAH|1|5|U|3920
3JAH|1|5|U|3921
3JAH|1|5|G|3922
3JAH|1|5|A|3923
*
3JAH|1|5|U|4188
3JAH|1|5|U|4189
3JAH|1|5|U|4190
3JAH|1|5|G|4191
*
3JAH|1|5|C|4204
3JAH|1|5|A|4205
*
3JAH|1|5|U|4227
3JAH|1|5|G|4228
*
3JAH|1|5|C|4375
3JAH|1|5|A|4376
3JAH|1|5|G|4377
3JAH|1|5|A|4378
3JAH|1|5|A|4379
3JAH|1|5|A|4380
3JAH|1|5|A|4381

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain A
uL2
Chain N
eL15
Chain Q
uL14
Chain T
eL21
Chain a
uL15
Chain o
eL42

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2355 s